FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7224858
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG750.001484586238.6635488
GCGTCGG14950.026.185907145
CGTATCA30450.014.284959145
CGCCGTA34500.013.658699145
GTGGTCG74900.013.647475145
GCCGTAT35300.012.733037145
TGGTCGC63450.012.682545145
TCTCGGT129350.012.554419145
CCGTATC34650.012.344224145
AGTGTAG272850.011.504798145
GATCTCG174750.011.491523145
GAGTGTA288500.011.408409145
GTGTAGA265850.011.371413145
AGATCTC203550.011.147777145
CGGTGGT104700.010.801721145
GGTCGCC74900.010.646967145
AGAGTGT336550.010.511998145
GTCGCCG59450.010.48725145
TCGGTGG126600.010.42204145
GTAGATC287350.09.940312145
Produced by FastQC (version 0.11.5)