FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9636899
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC80100.014.752677145
ATCTCGT118400.012.0623045145
ACCTTAC252150.011.903019145
CTCGTAT97950.011.546115145
CATCTCG148850.011.299387145
TCGTATG89500.011.259199145
TCTCGTA108350.011.1738615145
CACCTTA285400.010.922706145
TATGCCG65500.010.736092145
CTTACAT249700.010.510074145
TTACATC223750.010.400583145
AGTCACC496650.010.203343145
CCTTACA254650.09.878739145
ACCACCT397000.09.824433145
TCCAGTC632600.09.763963145
CAGTCAC569300.09.588916145
TCACCAC486300.09.138437145
TACATCT221400.09.135711145
CCACCTT409200.09.08861145
CCAGTCA589000.09.083575145
Produced by FastQC (version 0.11.5)