FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7116998
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG20750.034.940517145
CGCCGTA44050.013.8255145
CGTATCA38050.013.338003145
GTGGTCG93600.012.54835145
TGGTCGC80650.011.866345145
CGGTGGT125400.011.447617145
TCGCCGT64200.011.406012145
GTCGCCG73450.011.252797145
AGTGTAG300650.010.803494145
AGATCTC226450.010.629509145
TCTCGGT155950.010.41382145
TAGATCT227550.010.355092145
CCGTATC43600.010.309856145
GTGTAGA289500.010.16775145
TGTAGAT301800.010.137728145
GATCTCG193400.010.12173145
CTCGGTG174100.09.952829145
TAGGGAA565950.09.915402145
GCCGTAT43100.09.756593145
AGAGTGT361600.09.684254145
Produced by FastQC (version 0.11.5)