FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7891857
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACAC307000.08.146805145
ACCGACA296750.07.7930346145
CGACACA266450.07.6181397145
TCTCGTA151450.07.6108737145
TCACCGA349850.07.6048527145
CGTATGC137200.07.5031023145
GTCACCG408050.07.4973135145
CACCGAC326500.07.349393145
CCAGTCA481600.07.240444145
CGTCTGA703950.07.208798145
TCGTATG145250.07.187089145
TCTGAAC688350.07.140474145
CTCGTAT150750.07.069142145
TCCAGTC504200.07.0596843145
ATCTCGT161900.07.0300665145
CCGTCTT125250.07.0034857145
ACACGTC808750.07.0007305145
AACTCCA599800.06.9859905145
CAGTCAC478450.06.8941617145
CTCCAGT552850.06.7269263145
Produced by FastQC (version 0.11.5)