FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51149672
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG216350.015.999364145
CGCCGTA188500.013.494456145
TAGATCT1038950.012.436465145
AGTGTAG1477700.012.118228145
GATCTCG853700.012.070863145
GAGTGTA1548850.012.060777145
CCGTATC185200.011.900987145
ATCTCGG822050.011.63016145
TCTCGGT715900.011.426629145
GTGTAGA1434900.011.306256145
TGGTCGC371900.011.289482145
CGTATCA150500.011.139754145
GCCGTAT178150.010.911653145
GTGGTCG455550.010.818633145
TCGGTGG681100.010.641776145
TGTAGAT1524500.010.490063145
GGTCGCC392350.010.461616145
GTAGATC1550600.010.448644145
TCGCCGT268250.010.317706145
GTCGCCG338400.010.271618145
Produced by FastQC (version 0.11.5)