FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6176925
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA79400.014.061238145
ACACGTA112700.013.830502145
ACGTATC85650.013.796966145
TCACACG136700.013.629752145
TATGCCG22300.013.004046145
ATCTCGT40100.012.655434145
TCGTATG30150.012.022812145
CACGTAT97900.011.181952145
GTCACAC180500.010.643685145
ATCAATC76400.010.438129145
GTATCAA92750.010.395876145
CGTCTGA422250.010.112743145
AGTCACA222050.010.055955145
ACGTCTG457150.010.054348145
TCCAGTC264300.09.929669145
CCAGTCA246700.09.874009145
CACACGT664300.09.843865145
CACGTCT499900.09.745621145
TCTCGTA35300.09.447273145
AACTCCA331900.09.436259145
Produced by FastQC (version 0.11.5)