FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6237131
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCACA109500.012.182368145
AGTCACG157750.011.719222145
CTCGTAT39250.011.636674145
CGTATGC30550.010.916279145
TCTCGTA42650.010.709015145
TATGCCG25650.010.457849145
ACGTCTG423100.010.161075145
GTCACGC179000.09.9229555145
TCCAGTC249900.09.718663145
CACGTCT461100.09.480914145
TCGTATG33700.09.465657145
CACATAA102000.09.453214145
CGTCTGA389550.09.43567145
GAACTCC341200.09.3066435145
GTCTGAA413650.09.253987145
ATCTCGT45450.09.251712145
CACACGT514050.09.209495145
ACACGTC475600.09.1156435145
GCCACAT134100.09.082564145
CCAGTCA236800.09.031675145
Produced by FastQC (version 0.11.5)