FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005689086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62838887
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT322950.012.458921145
CGCCGTA349200.011.667689145
CGTATCA268250.011.64824145
TGGTCGC620050.011.528504145
CCGTATC324000.011.322135145
GTGGTCG737850.011.053689145
GTCGCCG554850.010.766496145
GATCTCG1346150.010.690299145
TCGCCGT446000.010.663303145
TCTCGGT1140850.010.663167145
TAGATCT1600250.010.465185145
GAGTGTA2243500.010.3794145
GGTCGCC630750.010.367453145
ATCTCGG1281200.010.2193575145
GTGTAGA2103150.09.858675145
AGTGTAG2158800.09.795955145
TCGGTGG1056550.09.729913145
CTCGGTG1248350.09.413897145
CGGTGGT997500.09.41195145
GTAGATC2178500.09.364602145
Produced by FastQC (version 0.11.5)