FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50863510
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGAAGT168250.023.6902831
CGAAGTG200500.021.877772
TCGAAGA218900.017.578551
CGAAGGG264050.015.1845192
TCGAAGG231300.014.5331021
CGAAGAG313350.014.3226382
TCGAAAA108000.013.5793991
GCGTCGG213750.012.44786145
CGAAAAG144300.011.4559362
AGTGTAG1482350.011.185366145
GAGTGTA1552900.011.050693145
GATCTCG903400.010.9944935145
GCCGTAT220000.010.940827145
TAGATCT1050900.010.831112145
CGCCGTA236400.010.4885145
TCGAAAT86850.010.3658481
ATCTCGG877050.010.349389145
GTGTAGA1441100.010.303164145
TCTCGGT758800.010.232858145
GTAGATC1555350.010.059074145
Produced by FastQC (version 0.11.5)