FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8650978
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC41300.015.2725115145
TCGTATG47400.014.0718355145
CTCGTAT52350.013.295229145
TATGCCG34550.011.961016145
GTCAATC115050.011.847113145
TCTCGTA58150.011.719779145
CCAGTCA426750.011.00887145
AGTGGTC217050.010.989487145
TCCAGTC462400.010.881353145
ATCTCGT62850.010.843359145
AGTCACA369950.010.719773145
CTCCAGT524300.010.440189145
TCACAGT343650.010.316533145
GTGGTCA202500.010.31119145
CAGTCAC415150.010.181336145
TGGTCAA190050.09.994813145
CGTCTGA791000.09.953931145
GTCACAG353100.09.8556385145
TGAACTC681700.09.75253145
AACTCCA589800.09.7478695145
Produced by FastQC (version 0.11.5)