FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7594907
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG24900.013.684882145
TCGTATG37200.012.863037145
CGTATGC31800.012.767429145
CTCGTAT42800.012.535177145
ATCTCGT51450.012.400517145
CCTCTAT142700.012.091928145
CCCTCTA156600.011.666789145
ACCCTCT193000.010.969027145
AGTCACC267050.010.886652145
CTCTATC140750.010.559612145
TCTATCA137000.010.531132145
CATCTCG72750.010.364369145
CGTCTGA580400.010.155602145
TCCAGTC347300.010.145513145
AACTCCA440900.010.112944145
TGAACTC509100.09.982917145
TCACCCT254000.09.819001145
TCTCGTA48750.09.815487145
GAACTCC482800.09.730839145
CACGTCT679450.09.710161145
Produced by FastQC (version 0.11.5)