FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8857927
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTCTA172650.014.948192145
CACTCCG273000.014.339577145
TCTCGTA71950.013.90444145
CGTCTAA155200.013.592724145
CTCCGTC252450.013.180823145
CGTATGC53550.013.131595145
TCTAATC140950.013.06393145
ACTCCGT254250.012.688324145
GTCTAAT154500.012.481257145
ATCTCGT78800.012.327749145
TCGTATG59650.012.274848145
TCCGTCT226050.011.930088145
TAATCTC137550.011.225979145
CTCGTAT66550.011.111107145
TCCAGTC538100.010.791324145
GTCACTC416600.010.719305145
TCACTCC373100.010.667246145
CCAGTCA496250.010.649573145
CTAATCT137400.010.605094145
TATGCCG44150.010.508833145
Produced by FastQC (version 0.11.5)