FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005689138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55575450
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA480650.013.499516145
GCCGTAT438850.013.001179145
CGTATCA354900.012.930693145
TGGTCGC820800.012.551072145
CCGTATC422600.012.437485145
TCGCCGT597050.012.251931145
ATCTCGG1705850.011.882845145
GGTCGCC806350.011.867915145
GTCGCCG717050.011.738344145
GATCTCG1826000.011.728266145
TAGATCT2139500.011.3448105145
TCTCGGT1516300.011.293247145
GTGGTCG954500.011.279104145
TCGGTGG1355700.010.96262145
CTCGGTG1574900.010.679701145
CGGTGGT1257850.010.593531145
AGTGTAG2927400.010.361764145
AGATCTC2229700.010.277847145
GTGTAGA2814200.010.227268145
GAGTGTA3072500.010.056472145
Produced by FastQC (version 0.11.5)