FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005689196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61544767
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA493750.012.745193145
CGTATCA374800.012.669967145
GCCGTAT451850.012.370688145
TGGTCGC838150.012.291534145
TCGCCGT614800.011.9338455145
CCGTATC439700.011.327499145
ATCTCGG1716600.011.251201145
GATCTCG1815200.011.251129145
GGTCGCC831050.011.210106145
TCTCGGT1513350.011.061609145
TAGATCT2122600.011.0426145
GTCGCCG738050.010.874158145
GTGGTCG978900.010.753803145
TCGGTGG1363550.010.564783145
CGGTGGT1272850.010.229698145
GTGTAGA2798700.010.159796145
AGATCTC2253950.010.12568145
CTCGGTG1588000.010.080506145
AGTGTAG2904550.010.054127145
GAGTGTA3037850.09.9590025145
Produced by FastQC (version 0.11.5)