FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7376238
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG213950.07.6917286145
GTCACGG16256.2830077E-77.584133145
CGTATGC237900.07.496371145
CACGTGT516050.07.403366145
AGTCACG584100.07.198652145
ATCTCGT276750.07.0727205145
GTCACGT555200.06.985777145
TCTCGTA263000.06.9187613145
CGTGTTC459150.06.9156003145
TCCAGTC740950.06.6629815145
CTCGTAT257800.06.608385145
GTTCTAA413800.06.604824145
GTATGCC239850.06.589116145
CAGTCAC685750.06.586165145
ACGTGTT476700.06.5545444145
CGTCTGA1002300.06.55301145
TGTTCTA446250.06.546922145
CTAATCT341900.06.467123145
TCGTATG250900.06.443392145
TCACGTG529150.06.398062145
Produced by FastQC (version 0.11.5)