FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7376238
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG19650.024.352116145
AGAGCGG45350.08.153577145
CGCCGTA230750.07.4152465145
CCGTATC214650.07.363443145
GTGGTCG310950.07.0182886145
AGTGTAG610050.06.845613145
GCCGTAT220850.06.795607145
TGGTCGC292900.06.782449145
GGTCGCC295050.06.782172145
GAGTGTA638250.06.781703145
GTGTAGA595450.06.6847067145
CTCGGTG411800.06.567163145
TCTCGGT405950.06.5367794145
AGATCTC501250.06.5089874145
CGGTGGT358450.06.4927964145
CGTATCA203350.06.4177628145
GTGTAGG990900.06.3437285145
AAGAGTG757050.06.3304157145
GTCGCCG275850.06.3080277145
GTAGATC638500.06.290775145
Produced by FastQC (version 0.11.5)