FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005689209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005689209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55720220
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG366100.014.277958145
CTCGTAT398550.013.82488145
TCTCGTA470650.013.062562145
CGTATGC338150.012.885332145
ACCGAAC1311650.012.519322145
AATCTCG577050.012.43805145
CGAACTT1129950.012.325335145
TATGCCG285600.012.184666145
CCGAACT1241850.011.926961145
ATCTCGT563000.011.859921145
CACCGAA1504000.011.607514145
CTTAATC849900.010.884624145
GAACTTA1216800.010.498259145
TCACCGA1773800.010.369227145
GTCACCG1917950.09.941435145
AACTTAA1194000.09.903306145
ACTTAAT1013200.09.61689145
GTATGCC449900.09.571963145
TTAATCT913300.09.247898145
TAATCTC862700.09.160038145
Produced by FastQC (version 0.11.5)