Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005706858 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31780208 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACTAA | 2060 | 0.0 | 22.766762 | 28 |
CCGACTA | 2405 | 0.0 | 19.645754 | 27 |
TATGCCG | 1725 | 0.0 | 19.276686 | 48 |
TCGTATG | 1820 | 0.0 | 18.270401 | 45 |
CGTATGC | 2090 | 0.0 | 16.077482 | 46 |
ACAACCG | 3195 | 0.0 | 14.896747 | 23 |
CGATAGG | 7325 | 0.0 | 14.765358 | 46 |
TCGATAG | 7405 | 0.0 | 14.700468 | 45 |
CTCGATA | 8190 | 0.0 | 13.377219 | 44 |
CTCGTAT | 2640 | 0.0 | 13.126128 | 44 |
GCGGGTT | 6120 | 0.0 | 12.014335 | 1 |
GTCGAAT | 1765 | 0.0 | 11.70413 | 1 |
GTGCTCG | 9795 | 0.0 | 11.399833 | 41 |
TGCCGTG | 10185 | 0.0 | 10.8947 | 37 |
CCGTGCT | 10470 | 0.0 | 10.731937 | 39 |
TGCTCGA | 10745 | 0.0 | 10.522177 | 42 |
GCCAGAT | 23085 | 0.0 | 10.480453 | 1 |
GTCGCGA | 605 | 8.5310603E-10 | 10.417151 | 1 |
TCGCGTG | 4305 | 0.0 | 10.323394 | 9 |
GGATACC | 10660 | 0.0 | 10.277603 | 67 |