FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005706876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005706876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37718611
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACTAA25200.024.99987628
TATGCCG33350.024.45501948
TCGTATG35550.023.13812345
CGTATGC37300.022.61595746
CCGACTA29700.021.4463727
TCGATAG105550.017.74170945
CGATAGG107450.017.36311146
ACAACCG37900.017.17416823
CTCGTAT45950.016.68306244
CTCGATA114850.016.21428544
GTATGCC57950.014.43616447
GTGCTCG136350.013.86269741
TGCCGTG142050.013.38092337
GTCGGAT21000.013.1699021
TCGCGTG75000.013.1104879
TGCTCGA152150.012.79143942
CCGTGCT153600.012.32891739
GCCAGAT311250.012.2375441
GTCGCGT82300.012.2026648
GTACGAT98150.011.98303166
Produced by FastQC (version 0.11.5)