FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005709058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35517330
Sequences flagged as poor quality0
Sequence length25-365
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATGGGGTACTTCAGGGTCAGGATGCCACGCTTGCTCTGGGCCTCGTCG736670.2074114242258638No Hit
GGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCCTTCCT703330.19802445735645105No Hit
GGCAATGAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCCTTCCT645730.18180702209315847No Hit
GTCCACGTCACACTTCATGATGGAGTTGAAGGTGGTCTCGTGGATGCCGC640160.18023877357898244No Hit
GTCCACGTCACACTTCATGATGGAGTTGAAGGTAGTTTCGTGGATGCCAC606400.1707335545774415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)