FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005709062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19215380
Sequences flagged as poor quality0
Sequence length25-357
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAATGAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCCTTCCT591250.3076962308317608No Hit
GTCCACGTCACACTTCATGATGGAGTTGAAGGTAGTTTCGTGGATGCCAC572030.2976938265077245No Hit
CAATGGGGTACTTCAGGGTCAGGATGCCACGCTTGCTCTGGGCCTCGTCG466290.24266499023178312No Hit
GGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCCTTCCT384260.19997522817659605No Hit
GTCCACGTCACACTTCATGATGGAGTTGAAGGTGGTCTCGTGGATGCCGC344290.17917418234768193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)