Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005709067 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17814211 |
Sequences flagged as poor quality | 0 |
Sequence length | 25-367 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCCTTCCT | 28916 | 0.16231984677850733 | No Hit |
CAATGGGGTACTTCAGGGTCAGGATGCCACGCTTGCTCTGGGCCTCGTCG | 28691 | 0.16105681020618876 | No Hit |
GTCCACGTCACACTTCATGATGGAGTTGAAGGTGGTCTCGTGGATGCCGC | 26978 | 0.15144089176893663 | No Hit |
GTCCACGTCACACTTCATGATGGAGTTGAAGGTAGTTTCGTGGATGCCAC | 26364 | 0.1479942053004761 | No Hit |
GGCAATGAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCCTTCCT | 26274 | 0.1474889906715487 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACGTAG | 850 | 0.0 | 36765.605 | 285-289 |
GCTGGTT | 14830 | 0.0 | 12643.602 | 300-304 |
GAAACCG | 7040 | 0.0 | 8878.059 | 295-299 |
AGTAACG | 1100 | 1.3024453E-4 | 7748.124 | 270-274 |
TAACGGT | 570 | 1.4321877E-4 | 7476.2607 | 260-264 |
TTTTTCA | 25485 | 0.0 | 7357.4497 | 305-306 |
TTACCCG | 1915 | 1.7942562E-4 | 6527.5757 | 275-279 |
ATACGTA | 775 | 0.0 | 6048.5356 | 280-284 |
TTTTCAA | 15975 | 1.18926284E-4 | 5868.6885 | 305-306 |
GGTTTTT | 8020 | 1.7983379E-4 | 5844.9062 | 300-304 |
TAACCGG | 2190 | 0.0 | 5707.9023 | 275-279 |
ACTGAGT | 5795 | 2.3472449E-4 | 5392.7124 | 285-289 |
CTGGTTT | 17675 | 1.4558443E-4 | 5304.232 | 300-304 |
AGCATCG | 4575 | 0.0 | 4553.8457 | 295-299 |
CGTCTCA | 3800 | 3.7006082E-4 | 4485.756 | 280-284 |
GTTTTTT | 10530 | 3.1000708E-4 | 4451.6763 | 290-294 |
CGTCGCT | 2225 | 4.3827618E-4 | 4213.5864 | 280-284 |
CTACTTA | 4175 | 0.0 | 4082.8438 | 280-284 |
GTTAGTT | 2095 | 0.0 | 4068.2273 | 270-274 |
TTTCAGC | 16030 | 3.5921927E-4 | 3899.035 | 295-299 |