Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005709068 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20385776 |
Sequences flagged as poor quality | 0 |
Sequence length | 25-357 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAATGGGGTACTTCAGGGTCAGGATGCCACGCTTGCTCTGGGCCTCGTCG | 37370 | 0.18331409115846264 | No Hit |
GGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCCTTCCT | 30978 | 0.1519588952610879 | No Hit |
GTCCACGTCACACTTCATGATGGAGTTGAAGGTGGTCTCGTGGATGCCGC | 29299 | 0.1437227604188332 | No Hit |
GGCAATGAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCCTTCCT | 25559 | 0.12537663515973096 | No Hit |
GTCCACGTCACACTTCATGATGGAGTTGAAGGTAGTTTCGTGGATGCCAC | 25109 | 0.12316921367133632 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTTTAA | 6095 | 0.0 | 36093.098 | 330 |
TTTAAAC | 8700 | 0.0 | 25285.914 | 320-324 |
ACCCGGG | 9375 | 0.0 | 23465.326 | 325-329 |
TTAAACC | 6150 | 0.0 | 17885.158 | 320-324 |
CCCTTTA | 4145 | 0.0 | 17690.988 | 315-319 |
TAAACCC | 4895 | 2.4335728E-5 | 14980.418 | 320-324 |
GGCCCTT | 16880 | 0.0 | 13032.432 | 315-319 |
CAAAGGG | 18825 | 0.0 | 11685.92 | 310-314 |
CCGGGTT | 6480 | 0.0 | 11316.227 | 325-329 |
CCCGGGT | 9765 | 3.228261E-5 | 11264.078 | 325-329 |
GGGTTTA | 4500 | 6.855378E-5 | 9777.22 | 325-329 |
AAAGGGC | 12540 | 5.3237694E-5 | 8771.429 | 310-314 |
GCCCTTT | 12765 | 0.0 | 8616.821 | 315-319 |
CGGGTTT | 7270 | 0.0 | 7564.9053 | 325-329 |
ACGGTTG | 4900 | 0.0 | 7482.5664 | 300-304 |
AACCCGG | 5895 | 0.0 | 7463.5264 | 320-324 |
AAACCCG | 7385 | 0.0 | 7447.104 | 320-324 |
CCTAGGA | 5345 | 1.4507171E-4 | 6859.6016 | 300-304 |
CCTTTAA | 8065 | 0.0 | 6819.201 | 315-319 |
CGGGTTA | 1775 | 2.0264338E-4 | 6196.829 | 285-289 |