FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005709079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22941221
Sequences flagged as poor quality0
Sequence length25-353
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATGGGGTACTTCAGGGTCAGGATGCCACGCTTGCTCTGGGCCTCGTCG489850.21352394451890766No Hit
GGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCCTTCCT421940.18392220710484417No Hit
GTCCACGTCACACTTCATGATGGAGTTGAAGGTGGTCTCGTGGATGCCGC401590.17505171150219073No Hit
GGCAATGAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCCTTCCT374610.16329122150909056No Hit
GTCCACGTCACACTTCATGATGGAGTTGAAGGTAGTTTCGTGGATGCCAC356860.15555405703994568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)