FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005709133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27856456
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC867816231.153144534968842No Hit
TTATCGTT702708025.226037368141878No Hit
GCGGATAG683828824.54830578591907No Hit
CATCTCCA531292619.07251231097021No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)