FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005709134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31040831
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC1188658938.29339813744033No Hit
GGCGAGTA724896723.353005594470073No Hit
ACTTCTAT664673021.412861015222177No Hit
CAAATACG525854516.940735252867427No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)