FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005709155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92210046
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGCGT2773304330.075945304267606Illumina PCR Primer Index 6 (100% over 8bp)
CGCCATCG2422343026.269838321087054No Hit
TAGTTGTC2262027924.531252267242117No Hit
GCAACAAA1763329419.12296410740322No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)