FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005709161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92458628
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGCGT2775746130.021493505181585Illumina PCR Primer Index 6 (100% over 8bp)
CGCCATCG2436289026.35004490873475No Hit
TAGTTGTC2267796324.52768712942615No Hit
GCAACAAA1766031419.100774456657525No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)