FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005709167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198583524
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC6026370230.3467784165216No Hit
GCAGTAGA5880079529.61010753339235No Hit
AGTAGTCT4447984522.39855759634923No Hit
CAGTACTG3503918217.64455645373682No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)