FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005709189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95598450
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGGGG1005850.019.4471172
GAGGGGT1010700.019.3471533
TTGAACG1027700.019.309921
CGGGACG557850.019.2489622
GGGGTAC1007350.019.2022915
AGGGGTA995450.019.1476924
GGGACGT564500.019.0158463
ATGAGGG1200300.018.992861
GAGACGA808450.018.9475829
AGACGAA808100.018.94076510
CGTCGGA657550.018.7236356
AAATAGA790650.018.7154084
ACGTCGG645850.018.7036765
ATAGAGA792500.018.655236
GTAGCCT1332800.018.6175128
AGCGCCT588000.018.612218
CCAAATA854100.018.6096822
AGGACGA287750.018.5925718
GAACGTC894400.018.5550043
AACGTCG653300.018.5057754
Produced by FastQC (version 0.11.5)