FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005709796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1843822
Sequences flagged as poor quality0
Sequence length10-61
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTT25570.13867933021734202No Hit
TTTTTTTTTTTTTT24060.1304898195162006No Hit
TTTTTTTTTTTTT23880.12951358645248837No Hit
TTTTTTTTTTT22860.12398159909145243No Hit
TTTTTTTTTTTTTTT20730.11242950783752444No Hit
TTTTTTTTTT20520.11129056926319353No Hit
TTTTTTTTTTTTTTTT18930.10266717720040222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)