FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005709798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1817639
Sequences flagged as poor quality0
Sequence length10-61
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTT24890.1369358822076331No Hit
TTTTTTTTTTTT24320.13379994597387052No Hit
TTTTTTTTTTT23230.12780315563211397No Hit
TTTTTTTTTTTTTT22630.12450217012289018No Hit
TTTTTTTTTTTTTTT20670.11371895079275918No Hit
TTTTTTTTTTTTTTTT19520.10739206190008027No Hit
TTTTTTTTTT19230.1057965855706221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)