FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005709803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386996
Sequences flagged as poor quality0
Sequence length10-85
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAA6740.17416200684244798No Hit
AAAAAAAAAAAAA6530.16873559416634798No Hit
AAAAAAAAAAAAAA6060.1565907657960289No Hit
AAAAAAAAAAA5740.14832194648006697No Hit
AAAAAAAAAA5590.14444593742570982No Hit
AAAAAAAAAAAAAAA5190.13410991328075744No Hit
AAAAAAAAAAAAAAAA4660.1204146812886955No Hit
AAAAAAAAAAAAAAAAA4120.10646104869300975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)