FastQCFastQC Report
Thu 23 Jun 2022
EGAF00005709807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394842
Sequences flagged as poor quality0
Sequence length10-85
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAA6700.16968812841592334No Hit
AAAAAAAAAAAAA6670.16892833082600128No Hit
AAAAAAAAAAAAAA6620.16766200150946453No Hit
AAAAAAAAAAA5860.14841379589810608No Hit
AAAAAAAAAA5730.14512133967511054No Hit
AAAAAAAAAAAAAAA5450.1380298955025048No Hit
AAAAAAAAAAAAAAAA4880.12359374129398595No Hit
AAAAAAAAAAAAAAAAA4000.1013063453229393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)