FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005709809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005709809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378873
Sequences flagged as poor quality0
Sequence length10-85
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAA6670.1760484383949239No Hit
AAAAAAAAAAAAAA6360.1678662770902123No Hit
AAAAAAAAAAAAA6220.16417110746872962No Hit
AAAAAAAAAAA5650.14912648829555022No Hit
AAAAAAAAAA5350.1412082676780874No Hit
AAAAAAAAAAAAAAA4870.12853911469014684No Hit
AAAAAAAAAAAAAAAA4830.1274833519411518No Hit
AAAAAAAAAAAAAAAAA4210.11111902933172858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)