FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005711386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005711386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences229795
Sequences flagged as poor quality0
Sequence length10-61
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTT3980.17319785025783851No Hit
TTTTTTTTTTTT3670.15970756543876063No Hit
TTTTTTTTTT3500.15230966731216955No Hit
TTTTTTTTTTTTT3210.13968972344916122No Hit
TTTTTTTTTTTTTT2870.12489392719597903No Hit
TTTTTTTTTTTTTTT2470.10748710807458822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)