FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005711398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005711398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494770
Sequences flagged as poor quality0
Sequence length10-61
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTT7180.14511793358530226No Hit
TTTTTTTTTTTT6790.1372354831537886No Hit
TTTTTTTTTT6440.1301614891767892No Hit
TTTTTTTTTTTTT5960.1204600117226186No Hit
TTTTTTTTTTTTTT5270.10651413788224831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)