FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005711555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005711555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences252630
Sequences flagged as poor quality0
Sequence length10-85
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAA7690.30439773581918217No Hit
AAAAAAAAAAAAA7450.2948976764438111No Hit
AAAAAAAAAAAA7440.294501840636504No Hit
AAAAAAAAAA7000.2770850651149903No Hit
AAAAAAAAAAAAAA6710.2656058267030836No Hit
AAAAAAAAAAAAAAA5580.220876380477378No Hit
AAATAGAATT4650.184063650397815No Hit
AAAAAAAAAAAAAAAA4210.1666468748763013No Hit
AAAAAAAAAAAAAAAAA3500.13854253255749516No Hit
AAAAAAAAAAAAAAAAAA3230.12785496576020267No Hit
AAAAAAAAAAAAAAAAAAA2610.10331314570716067No Hit
GCCGGTAAAT2530.10014645924870363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)