FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005711557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005711557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences229546
Sequences flagged as poor quality0
Sequence length10-85
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAA6850.2984151324788931No Hit
AAAAAAAAAAAA6810.29667256236222805No Hit
AAAAAAAAAA6100.2657419427914231No Hit
AAAAAAAAAAAAAA5870.2557221646205989No Hit
AAAAAAAAAAAAA5750.2504944542706037No Hit
AAAAAAAAAAAAAAA4340.18906885765816No Hit
AAATAGAATT3750.16336594843735025No Hit
AAAAAAAAAAAAAAAA3600.15683131049985624No Hit
AAAAAAAAAAAAAAAAA2920.12720761851655005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)