FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005711559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005711559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences256648
Sequences flagged as poor quality0
Sequence length10-85
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAA8360.32573797574888563No Hit
AAAAAAAAAAAAA7800.303918207038434No Hit
AAAAAAAAAAA7550.2941772388641252No Hit
AAAAAAAAAA7010.2731367476076182No Hit
AAAAAAAAAAAAAA6890.26846108288395No Hit
AAAAAAAAAAAAAAA5940.2314454038215766No Hit
AAATAGAATT4550.1772856207724198No Hit
AAAAAAAAAAAAAAAA4450.1733892335026963No Hit
AAAAAAAAAAAAAAAAA3680.14338705152582526No Hit
AAAAAAAAAAAAAAAAAA2820.10987812100620306No Hit
AAAAAAAAAAAAAAAAAAA2630.10247498519372837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)