FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005711560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005711560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences256648
Sequences flagged as poor quality0
Sequence length10-61
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTT7870.3066456781272404No Hit
TTTTTTTTTTTT7780.3031389295844893No Hit
TTTTTTTTTTT7190.28015024469312055No Hit
TTTTTTTTTTTTTT6820.26573361179514354No Hit
TTTTTTTTTT6300.24547239799258125No Hit
TTTTTTTTTTTTTTT5680.2213147969202955No Hit
TTTTTTTTTTTTTTTT4780.1862473114927839No Hit
TTTTTTTTTTTTTTTTT4330.1687135687790281No Hit
TTTTTTTTTTTTTTTTTT4100.159751878058664No Hit
TTTTTTTTTTTTTTTTTTT3710.1445559677067423No Hit
TTTTTTTTTTTTTTTTTTTT2760.10754028864436893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)