FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005713184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005713184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1382580
Sequences flagged as poor quality0
Sequence length10-61
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTT25330.18320820495016563No Hit
TTTTTTTTTTTT24940.1803873916880036No Hit
TTTTTTTTTTT23340.16881482445862084No Hit
ATTCTATTTAC22110.15991841340103286No Hit
TTTTTTTTTTTTTT21780.15753157140997265No Hit
TTTTTTTTTT21120.1527578874278523No Hit
TTTTTTTTTTTTTTT17940.12975741005945407No Hit
TTTTTTTTTTTTTTTT14050.10162160598301727No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)