FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005713535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005713535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10628742
Sequences flagged as poor quality0
Sequence length10-85
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGGCTGGCTTACCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACC371120.34916643945257114Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
CATGGCTGGCTTAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTG220360.20732462976333418TruSeq Adapter, Index 7 (97% over 36bp)
CATGGCTGGCTTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGA184360.173454205587077TruSeq Adapter, Index 7 (97% over 37bp)
CATGGCTGGCTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAT156760.14748688038527985TruSeq Adapter, Index 7 (97% over 38bp)
CATGGCTGGCTTACCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC153460.14438209150245626Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
CATGGCTGGCTTACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCT137460.12932856964634196TruSeq Adapter, Index 1 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)