FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005713578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005713578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11346363
Sequences flagged as poor quality0
Sequence length10-61
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTCC366550.32305506178499666No Hit
TTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTC251210.22140134243898243No Hit
TTTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTT179320.1580418324356448No Hit
TTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTT122590.1080434320671743No Hit
GGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACACTTTAGGACGTGAA115440.10174185331458195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)