FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005713580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005713580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11701634
Sequences flagged as poor quality0
Sequence length10-61
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTCC379310.3241513108340254No Hit
TTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTC262290.22414818306571543No Hit
TTTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTT181580.1551749097604659No Hit
TTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTT125130.10693378377754764No Hit
GGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACACTTTAGGACGTGAA117750.1006269722672919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)