FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005714482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005714482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6662164
Sequences flagged as poor quality0
Sequence length10-61
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTCC406230.6097568297628219No Hit
TTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTC234440.3518976716874577No Hit
TTTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTT149760.22479182439819856No Hit
GGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACACTTTAGGACGTGA143140.21485511314341707No Hit
CATTTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCAT111520.16739305727088075No Hit
TTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTT104120.15628555526402532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)