FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005714486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005714486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6719996
Sequences flagged as poor quality0
Sequence length10-61
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTCC412360.6136313176376891No Hit
TTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTC234800.3494049698839106No Hit
TTTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTT153320.22815489771124864No Hit
GGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACACTTTAGGACGTGA144210.21459834202282266No Hit
CATTTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCAT111640.16613105126848288No Hit
TTTTCACGTTTTTTAGTGATTTCGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTT107570.16007450004434526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)