FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005715116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005715116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2007314
Sequences flagged as poor quality0
Sequence length10-85
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAACTGGTTTTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGT23630.11771949978927063TruSeq Adapter, Index 16 (100% over 37bp)
GTAACTGGTTTTACCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC23160.11537806242570918Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GTAACTGGTTTTAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCG20280.10103053134686452TruSeq Adapter, Index 7 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)