FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005715223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005715223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131574
Sequences flagged as poor quality0
Sequence length10-61
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTT2870.21812820162038093No Hit
TTTTTTTTTTTTT2840.21584811588915742No Hit
TTTTTTTTTTTT2790.21204797300378495No Hit
TTTTTTTTTTTTTTT2360.17936674418958154No Hit
TTTTTTTTTTT2240.17024640126468757No Hit
TTTTTTTTTTTTTTTTT2110.16036602976271908No Hit
TTTTTTTTTTTTTTTT1980.1504856582607506No Hit
TTTTTTTTTT1890.14364540106708013No Hit
TTTTTTTTTTTTTTTTTTT1640.12464468664021768No Hit
TTTTTTTTTTTTTTTTTT1630.12388465806314317No Hit
TTTTACCGGC1360.10336388648213174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)