FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005715225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005715225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences214880
Sequences flagged as poor quality0
Sequence length10-61
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTT4210.19592330603127325No Hit
TTTTTTTTTTTTT4020.18708116157855548No Hit
TTTTTTTTTTTTTT3850.17916976917349217No Hit
TTTTTTTTTTT3780.1759121370067014No Hit
TTTTTTTTTTTTTTT3350.15590096798212957No Hit
TTTTTTTTTT2890.13449367088607594No Hit
TTTTTTTTTTTTTTTT2720.12658227848101267No Hit
TTTTTTTTTTTTTTTTT2420.1126209977661951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)